Capabilities

  • Software | saCeSS: a parallel global optimization library

    The saCeSS library allows solving non-linear programming (NLP) and mixed-integer non-linear programming (MINLP) problems. It also offers efficient local solvers for nonlinear parameter estimation problems associated with complex models (e.g. those described by differential equations).

    More information here.

     

  • Software | AMIGO2: Advanced Modelling and Identification using Global Optimization, version 2

    AMIGO2 is a MATLAB-based multiplatform toolbox designed to solve mathematical optimization problems at the core of systems biology, within the context of parametric model identification, the underlying hypothesis for model development and the optimal control of biological systems to synthetically achieve the desired behavior.

    More information here.

  • Software | PREMER: fast network inference with information theory

    PREMER (Parallel Reverse Engineering with Mutual information & Entropy Reduction) is an open-source, multi-platform software tool for inferring network structures from data using information-theoretic measures. While this general purpose tool has been developed with biological networks in mind, it can be applied to other areas.

    More information here.

     

Active projects